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Ongoing Projects

Bacterial

Genomic Analysis of the Classical Bordetella
KPC and Klebsiella pneumoniae: virulence and resistance converge

Leptospira Genomics and Human Health

Fungal

Community Resources for Aspergillus fumigatus
Cryptococcus gattii Genomics and Transcriptomics

Parasite

Molecular Hallmarks of Naturally Acquired Immunity to Malaria
Plasmodium Sporozoite
Genome sequencing of clinically important strains of Toxoplasma gondii
Human and Toxoplasma gondii Genetics and Cellular/Molecular Interactions

Virus

Sequencing of Human Adenovirus clinical isolates from recent and Reference Genomes
Molecular Epidemiology of Enteric Calici Viruses
Coronavirus Sequencing to track Diversity, Virus Adaptation, and Pathogenesis in Humans and Animals.
Complete genome sequencing of a collection of eastern equine encephalitis viruses (EEEV)
Sequencing and variation with Filovirus Stocks
Influenza Genome Sequencing
Role of microbiome diversity, microbial transcriptome and host gene expression in the respiratory track of humans in influenza virus infection.
Role of the Untranslated Regions of the Influenza A Virus Replication and Vaccines
Norovirus Genomics and its Applications to Vaccine Development
Paramyxovirus Sequencing
The evolution of human respiratory viruses in Peru
Sequence studies of Respiratory Syncytial Virus (RSV) from a 2012-2013 community outbreak in USA to identify signature sequences associated with disease severity and transmission
Rotavirus Genomics and Metagenomics of African Stool Samples
Sequencing of South American Human Group A Rotavirus genomes

Other

Distribution of pre-configured data analysis pipelines and viral genome sequences from GSC projects through Virtual Machine servers on the cloud
Characterization of the changes in the microbial diversity and microbiome expression in the upper respiratory track of ferrets (Mustela putorius furo) during influenza virus infection
High Yield (HY) Reassortants Bioinformatics
Alterations in the nasal microbiome during human influenza infections
Characterization of small non-coding RNAs in the gut microbiome
Synthetic Genomic Tools to Improve Influenza Virus Vaccine Production (SYNFLUENZA)
Synthetic Genomic Tools for Drug Discovery and Natural Products Functional Genomics (CLUSTER)

View Completed Projects